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Transfer learning for atomistic simulations using GNNs and kernel mean embeddings

Falk, JI; Bonati, L; Novelli, P; Parrinello, M; Pontil, M; (2023) Transfer learning for atomistic simulations using GNNs and kernel mean embeddings. In: Oh, Alice and Naumann, Tristan and Globerson, Amir and Saenko, Kate and Hardt, Moritz and Levine, Sergey, (eds.) Advances in Neural Information Processing Systems. Green open access

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Abstract

Interatomic potentials learned using machine learning methods have been successfully applied to atomistic simulations. However, accurate models require large training datasets, while generating reference calculations is computationally demanding. To bypass this difficulty, we propose a transfer learning algorithm that leverages the ability of graph neural networks (GNNs) to represent chemical environments together with kernel mean embeddings. We extract a feature map from GNNs pre-trained on the OC20 dataset and use it to learn the potential energy surface from system-specific datasets of catalytic processes. Our method is further enhanced by incorporating into the kernel the chemical species information, resulting in improved performance and interpretability. We test our approach on a series of realistic datasets of increasing complexity, showing excellent generalization and transferability performance, and improving on methods that rely on GNNs or ridge regression alone, as well as similar fine-tuning approaches.

Type: Proceedings paper
Title: Transfer learning for atomistic simulations using GNNs and kernel mean embeddings
Event: NeurIPS 2023
Open access status: An open access version is available from UCL Discovery
Publisher version: https://papers.nips.cc/paper_files/paper/2023
Language: English
Additional information: This version is the version of record. For information on re-use, please refer to the publisher’s terms and conditions.
UCL classification: UCL
UCL > Provost and Vice Provost Offices > UCL BEAMS
UCL > Provost and Vice Provost Offices > UCL BEAMS > Faculty of Engineering Science
UCL > Provost and Vice Provost Offices > UCL BEAMS > Faculty of Engineering Science > Dept of Computer Science
URI: https://discovery-pp.ucl.ac.uk/id/eprint/10192097
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